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Primaquine

Raw research findings for this medication. Mostly single studies, not curated or confirmed robust.

About Primaquine

What it is

Primaquine is an antimalarial of the 8-aminoquinoline family. Unlike most antimalarials it kills the dormant liver stage of the vivax and ovale malaria parasites, so it is used to stop these infections from coming back weeks or months later, and at a low dose to block malaria transmission. It is also used for Pneumocystis pneumonia together with clindamycin.

How genes come into it

Two genes matter. G6PD protects red blood cells, and people with G6PD deficiency (common where malaria is or was widespread, and more often in men) are at risk of haemolysis, the breakdown of red blood cells, on primaquine; CPIC has published a guideline on G6PD that covers it, and the US label mentions it. Separately, primaquine needs the liver enzyme CYP2D6 to become active, and studies find that people with low CYP2D6 activity are more likely to have vivax malaria return.

Published guidelines

Clinical guidelines that name a gene for Primaquine. They sort people into groups by the gene copies they carry.

CPIC guideline: G6PD. Normal · Indeterminate · Variable · Deficient · Deficient with CNSHA. Strong. 2023.

US FDA: G6PD. Deficient with CNSHA · Deficient · Variable.

What research found

Every published finding on gene variants and Primaquine. Upload your DNA file to see which of these rows apply to you.

Rated evidence (1 rated variant)

PharmGKB weighs all studies of a variant and rates how strong the evidence is, from 1A (strongest) to 4.

G6PD;IKBKG rs1050828: Level 3. Toxicity. 1.

Metabolism (4 findings)

Studies of how quickly the body processes this medication.

CYP2D6 CYP2D6 intermediate metabolizer: CYP2D6 intermediate metabolizer is associated with decreased metabolism of primaquine in healthy individuals as compared to CYP2D6 normal metabolizer.

CYP2D6 CYP2D6*1, CYP2D6*4, CYP2D6*5, CYP2D6*6, CYP2D6*10, CYP2D6*41: CYP2D6 *4/*41 + *5/*6 are associated with decreased clearance of primaquine in people with Malaria as compared to CYP2D6 *1/*1 + *1/*10 + *1/*4 + *1/*5 + *1/*41.

CYP2D6 CYP2D6*1, CYP2D6*4, CYP2D6*5, CYP2D6*6, CYP2D6*10, CYP2D6*41: CYP2D6 *4/*41 + *5/*6 are associated with increased concentrations of primaquine in people with Malaria as compared to CYP2D6 *1/*1 + *1/*10 + *1/*4 + *1/*5 + *1/*41.

G6PD G6PD deficiency: G6PD deficiency is not associated with increased concentrations of carboxyprimaquine, primaquine or primaquine n-carbamoyl glucuronide in men as compared to G6PD non-deficient.

Response (5 findings)

Studies of how well it worked in people carrying a variant.

CYP2D6 CYP2D6*1, CYP2D6*2, CYP2D6*4, CYP2D6*5, CYP2D6*9, CYP2D6*17, CYP2D6*29, CYP2D6*34, CYP2D6*39, CYP2D6*41: CYP2D6 *4/*4 + *4/*5 + *4/*9 + *2/*4 + *1/*4 + *1/*5 + *9/*9 (assigned as intermediate metabolizer and poor metabolizer phenotype) is associated with increased concentrations of primaquine in people with Malaria, Vivax as compared to CYP2D6 *2/*41 + *1/*41 + *2/*17 + *2/*29 + *1/*29 + *1/*1 + *1/*2 + *2/*2 + *1/*39 + *1/*34 + *2/*34 (assigned as normal metabolizer and ultrarapid metabolizer phenotype) .

CYP2D6 CYP2D6*1, CYP2D6*2, CYP2D6*4, CYP2D6*9, CYP2D6*10, CYP2D6*41: CYP2D6 *4/*41 + *1/*4 + *10/*10 + *10/*41 + *2/*4 + *41/*41 is associated with decreased response to primaquine in people with Malaria as compared to CYP2D6 *1/*10 + *1/*41 + *1/*9 + *2/*10 + *2/*41 + *1/*1 + *1/*2 + *2/*2.

CYP2D6 CYP2D6*1, CYP2D6*4, CYP2D6*5, CYP2D6*6, CYP2D6*10, CYP2D6*41: CYP2D6 *4/*41 + *5/*6 are associated with decreased response to primaquine in people with Malaria as compared to CYP2D6 *1/*1 + *1/*10 + *1/*4 + *1/*5 + *1/*41.

CYP2D6 CYP2D6 poor metabolizers and intermediate metabolizers: CYP2D6 poor metabolizers and intermediate metabolizers is not associated with decreased clinical benefit to primaquine in children with Malaria as compared to CYP2D6 normal metabolizer.

Study findings and evidence levels: PharmGKB (CC BY-SA 4.0). Guidelines: CPIC and DPWG, as bundled in PharmCAT. Most studies were done mainly in people of European ancestry.

Related Drugs

More drugs from the same category

Artemether (Antimalarials)

Artesunate (Antimalarials)

Chloroquine (Antimalarials)

Not a prescribing recommendation. This page is educational information about pharmacogenomic research and clinical guidelines - it is not medical or dosing advice, and not a prediction of how any medication will work for you. Never start, stop, or change a medication or dose based on it; talk to your doctor or pharmacist, who can order clinical-grade testing if appropriate.

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Content updated September 2026.

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