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rs6733839 (BIN1)

What you carry at this position in your DNA and what research says about it.

Alzheimer's Disease Risk: 10/10 evidence, 18 publications.

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Sample genotype (not yours): C/C

Typical Alzheimer's Risk

Two copies of the protective C allele are associated with a typical risk of developing Alzheimer's disease. This genetic profile does not carry the elevated risk associated with the T allele.

What this genotype means: Typical baseline risk for Alzheimer's disease; Typical memory and language performance during aging.

Sample genotype (not yours): C/T

Increased Alzheimer's Risk

One copy of the T allele is associated with a moderately increased risk of developing Alzheimer's disease. It is also linked to slightly faster cognitive decline in late life.

What this genotype means: Moderately increased risk of Alzheimer's disease; Slightly faster cognitive decline during aging.

Sample genotype (not yours): T/T

Elevated Alzheimer's Risk

Two copies of the T allele are associated with the highest genetic risk at this locus for Alzheimer's disease. It is also linked to earlier onset of cognitive symptoms.

What this genotype means: Significantly increased risk of Alzheimer's disease; Earlier onset of cognitive symptoms.

About BIN1

Gene function and biological role

Gene Function: BIN1 encodes the bridging integrator 1 protein, which is the second most important genetic risk factor for late-onset Alzheimer's disease after APOE [1]. This protein is heavily involved in endocytosis, membrane trafficking, and cytoskeletal regulation within brain cells [2]. Research indicates that BIN1 interacts directly with tau protein, a key driver of neurofibrillary tangles in Alzheimer's pathology [3]. It is also highly expressed in microglia, the brain's resident immune cells, where it plays a critical role in regulating neuroinflammation [4].

Variant Impact: Located in an intron of the BIN1 gene region, rs6733839 acts as a major regulatory switch [1]. The risk-associated T allele alters a binding site for the transcription factor MEF2C, which specifically increases BIN1 expression in microglia [4]. This elevated expression is thought to disrupt normal endocytosis and promote the accumulation of toxic proteins in the brain [3]. Consequently, this variant is strongly associated with increased susceptibility to late-onset Alzheimer's disease and accelerated cognitive decline [2].

Key Insight: BIN1 is the second most significant genetic risk factor for late-onset Alzheimer's disease, and this specific variant alters microglia immune cell behavior in the brain.

Location: BIN1. Chromosome 2 · 2q14.3 · 127.1 Mb

Genotype Frequencies

Estimated prevalence by population

Global 36.8%; European 37.8%; African 36.5%; East Asian 36.2%; South Asian 36.1%; Americas 31.4%; Ashkenazi 39.3%; Finnish 38.5%; Middle Eastern 49.6%; Amish 31.6%.

Estimated CC genotype frequency.

Global 47.7%; European 47.4%; African 47.8%; East Asian 47.9%; South Asian 48.0%; Americas 49.3%; Ashkenazi 46.8%; Finnish 47.1%; Middle Eastern 41.7%; Amish 49.2%.

Estimated CT genotype frequency.

Global 15.5%; European 14.8%; African 15.7%; East Asian 15.9%; South Asian 15.9%; Americas 19.3%; Ashkenazi 13.9%; Finnish 14.4%; Middle Eastern 8.8%; Amish 19.1%.

Estimated TT genotype frequency.

Associated Traits

Showing effects for C/C genotype

Neurology & Mental Health

Neurodegenerative Diseases

Alzheimer's Disease. Evidence: 10/10. Source: PMID 24162737. Typical Risk.

Lewy Body Dementia. Evidence: 6/10. Source: PMID 33589841. Typical Risk.

Age of Alzheimer's Onset. Evidence: 10/10. Source: PMID 40883957. Typical Age.

Alzheimer's Pathology. Evidence: 3/10. Source: PMID 29458411. Typical Levels.

Memory, Learning & Attention

Memory Performance. Evidence: 7/10. Source: PMID 37349795. Typical Performance.

Cognitive Performance

Language Ability. Evidence: 6/10. Source: PMID 37349795. Typical Ability.

Showing effects for C/T genotype

Alzheimer's Disease. Evidence: 10/10. Source: PMID 24162737. ~1.18x Increased Risk.

Lewy Body Dementia. Evidence: 6/10. Source: PMID 33589841. ~1.16x Increased Risk.

Age of Alzheimer's Onset. Evidence: 10/10. Source: PMID 40883957. Slightly Earlier.

Alzheimer's Pathology. Evidence: 3/10. Source: PMID 29458411. Slightly Increased.

Memory Performance. Evidence: 7/10. Source: PMID 37349795. Slightly Lower.

Language Ability. Evidence: 6/10. Source: PMID 37349795. Slightly Lower.

Showing effects for T/T genotype

Alzheimer's Disease. Evidence: 10/10. Source: PMID 24162737. ~1.4x Increased Risk.

Lewy Body Dementia. Evidence: 6/10. Source: PMID 33589841. ~1.35x Increased Risk.

Age of Alzheimer's Onset. Evidence: 10/10. Source: PMID 40883957. Earlier Onset.

Alzheimer's Pathology. Evidence: 3/10. Source: PMID 29458411. Increased Levels.

Memory Performance. Evidence: 7/10. Source: PMID 37349795. Lower Performance.

Language Ability. Evidence: 6/10. Source: PMID 37349795. Lower Performance.

What CC Genotype Means

What this genotype means for the people who carry it

Sample genotype: CC (Homozygous)

Two copies of the protective C allele are associated with typical baseline risk for late-onset Alzheimer's disease [1]. This genetic profile is linked to typical rates of cognitive aging, including stable memory performance and language ability over time [2]. Neuropathological studies indicate that this genotype is associated with lower levels of neuritic plaques and neurofibrillary tangles compared to T allele carriers [3]. Additionally, it is associated with a typical age of onset for age-related cognitive changes [4]. The C/C genotype represents the most common genetic baseline in the population.

Typical baseline risk for Alzheimer's disease; Typical memory and language performance during aging.

What CT Genotype Means

Sample genotype: CT (Heterozygous)

One copy of the T allele at this locus is associated with a moderately increased risk of late-onset Alzheimer's disease, with an odds ratio of approximately 1.18 [1]. This genetic variant is also linked to a higher risk of Lewy body dementia, suggesting a shared pathway in neurodegenerative diseases [2]. Research indicates that carriers of the T allele may experience slightly faster declines in episodic memory and language performance during aging [3]. On a cellular level, this variant is associated with a higher burden of neuritic plaques and neurofibrillary tangles in the brain [4]. These changes are thought to be driven by altered expression of the BIN1 protein in microglia [5].

Moderately increased risk of Alzheimer's disease; Slightly faster cognitive decline during aging.

What TT Genotype Means

Sample genotype: TT (Homozygous)

Two copies of the T allele are associated with the highest risk of developing Alzheimer's disease at this locus, with a significantly elevated odds ratio [1]. This genotype is also linked to an earlier age of onset for Alzheimer's symptoms compared to those with the protective C allele [2]. Cognitive studies show that individuals with the T/T genotype perform worse on tests of episodic memory and language ability in late life [3]. Neuropathological evaluations have found that this genotype correlates with the highest density of neuritic plaques and neurofibrillary tangles [4]. The T allele is believed to increase BIN1 protein levels, which disrupts cellular clearance mechanisms in the brain [5].

Significantly increased risk of Alzheimer's disease; Earlier onset of cognitive symptoms.

Related Variants

Variants with shared genetic architecture

rs744373 · BIN1 Gene · Chr 2 · Alzheimer's Disease Risk

rs7561528 · BIN1 Gene · Chr 2 · Alzheimer Disease Risk

rs769449 · APOE Gene · Chr 19 · Alzheimer's Disease Risk

Sources

Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease.

Potential contribution of the Alzheimer's disease risk locus BIN1 to episodic memory performance in cognitively normal Type 2 diabetes elderly.

Genome-wide association meta-analysis of neuropathologic features of Alzheimer's disease and related dementias.

Genome-wide meta-analysis, fine-mapping and integrative prioritization implicate new Alzheimer's disease risk genes.

A genome-wide search for pleiotropy in more than 100,000 harmonized longitudinal cognitive domain scores.

Genome-wide pleiotropy analysis of neuropathological traits related to Alzheimer's disease.

Multi-ancestry meta-analysis identifies genetic modifiers of age-at-onset of Alzheimer's disease at known and novel loci.

Genome sequencing analysis identifies new loci associated with Lewy body dementia and provides insights into its genetic architecture.

A genome-wide association study of serum proteins reveals shared loci with common diseases.

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Content updated August 2026.

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