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rs2943641 (IRS1)

What you carry at this position in your DNA and what research says about it.

Type 2 Diabetes Risk: 5/10 evidence, 17 publications.

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Sample genotype (not yours): T/T

Lower Risk of Type 2 Diabetes

Two copies of the protective T allele are associated with optimal insulin sensitivity and healthier blood lipid levels. This genetic profile helps maintain efficient glucose clearance and supports cardiovascular health.

What this genotype means: Lower risk of type 2 diabetes; Higher protective HDL cholesterol; Lower fasting insulin levels.

Sample genotype (not yours): C/C

~1.2x Higher Risk of Type 2 Diabetes

Two copies of the risk-associated C allele are linked to reduced insulin sensitivity and higher triglycerides. Choosing a low-fat, high-carbohydrate diet or staying active can help manage this risk.

What this genotype means: Elevated risk of type 2 diabetes; Higher circulating triglycerides; Reduced insulin sensitivity.

Sample genotype (not yours): T/C

Increased Risk of Type 2 Diabetes

Carrying one copy of the risk-associated C allele is linked to slightly reduced insulin sensitivity and elevated triglycerides. Proactive lifestyle choices can help offset this genetic predisposition.

What this genotype means: Moderately increased risk of type 2 diabetes; Slightly elevated triglycerides; Slightly lower HDL cholesterol.

About IRS1

Gene function and biological role

Gene Function: Insulin receptor substrate 1, encoded by the IRS1 gene, is a key signaling protein that transmits signals from the insulin receptor to intracellular pathways [1]. It plays a central role in maintaining glucose homeostasis and regulating lipid metabolism [1]. Proper functioning of this protein is essential for cells to take up glucose from the bloodstream in response to insulin [1]. Disruption in IRS1 signaling is a primary driver of insulin resistance, which can lead to metabolic dysfunction [1]. Variations near this gene can alter its expression levels, thereby influencing metabolic health and diabetes susceptibility [2].

Variant Impact: Located in an intergenic region near the IRS1 gene, rs2943641 is a common genetic variant that acts as a regulatory marker for insulin sensitivity [1]. The DNA change at this position influences the expression of nearby genes involved in insulin signaling and lipid transport [1]. Carrying the risk-associated C allele is linked to reduced insulin sensitivity, higher fasting insulin, and altered blood lipid profiles [1]. Conversely, the protective T allele is associated with improved metabolic markers, including higher levels of protective HDL cholesterol and adiponectin [3] [4].

Key Insight: While the C allele increases diabetes risk, clinical trials suggest that individuals with the C/C genotype may actually lose more weight and improve their insulin sensitivity better on a low-fat, high-carbohydrate diet than on other diets.

Location: IRS1. Chromosome 2 · 2q36.3 · 226.2 Mb

Genotype Frequencies

Estimated prevalence by population

Global 10.7%; European 13.0%; African 9.4%; East Asian 0.5%; South Asian 5.7%; Americas 6.7%; Ashkenazi 8.0%; Finnish 14.0%; Middle Eastern 21.4%; Amish 18.6%.

Estimated TT genotype frequency.

Global 42.9%; European 46.1%; African 42.6%; East Asian 13.6%; South Asian 36.3%; Americas 38.4%; Ashkenazi 40.6%; Finnish 46.8%; Middle Eastern 49.7%; Amish 49.0%.

Estimated TC genotype frequency.

Global 46.4%; European 40.9%; African 48.0%; East Asian 85.9%; South Asian 58.0%; Americas 54.9%; Ashkenazi 51.4%; Finnish 39.3%; Middle Eastern 28.9%; Amish 32.4%.

Estimated CC genotype frequency.

Associated Traits

Showing effects for T/T genotype

Cardiovascular & Metabolic

Diabetes & Glycemic Traits

Type 2 Diabetes. Evidence: 5/10. Source: PMID 19734900. Lower Risk.

Lipids & Cholesterol

Triglycerides. Evidence: 8/10. Source: PMID 29507422. Lower Levels.

HDL Cholesterol. Evidence: 6/10. Source: PMID 29507422. Higher Levels.

Metabolic Syndrome & Insulin Resistance

Insulin Sensitivity. Evidence: 5/10. Source: PMID 19734900. Typical Sensitivity.

Adiponectin Levels. Evidence: 6/10. Source: PMID 31178129. Higher Levels.

Endocrine & Reproductive

Hormone Levels & Endocrine Regulation

SHBG Levels. Evidence: 8/10. Source: PMID 32042192. Higher Levels.

Showing effects for C/C genotype

Type 2 Diabetes. Evidence: 5/10. Source: PMID 19734900. ~1.2x Higher Risk.

Triglycerides. Evidence: 8/10. Source: PMID 29507422. Higher Levels.

HDL Cholesterol. Evidence: 6/10. Source: PMID 29507422. Lower Levels.

Insulin Sensitivity. Evidence: 5/10. Source: PMID 19734900. Reduced Sensitivity.

Adiponectin Levels. Evidence: 6/10. Source: PMID 31178129. Lower Levels.

SHBG Levels. Evidence: 8/10. Source: PMID 32042192. Lower Levels.

Showing effects for T/C genotype

Type 2 Diabetes. Evidence: 5/10. Source: PMID 19734900. Increased Risk.

Triglycerides. Evidence: 8/10. Source: PMID 29507422. Slightly Elevated.

HDL Cholesterol. Evidence: 6/10. Source: PMID 29507422. Slightly Lower.

Insulin Sensitivity. Evidence: 5/10. Source: PMID 19734900. Slightly Reduced.

Adiponectin Levels. Evidence: 6/10. Source: PMID 31178129. Slightly Lower.

SHBG Levels. Evidence: 8/10. Source: PMID 32042192. Slightly Lower.

What TT Genotype Means

What this genotype means for the people who carry it

Sample genotype: TT (Homozygous)

Inheriting two copies of the protective T allele is associated with a significantly reduced risk of developing type 2 diabetes [1]. This genetic profile correlates with lower fasting insulin levels and superior insulin sensitivity, allowing cells to clear glucose from the blood more efficiently [1]. In addition to glucose control, this genotype is linked to favorable lipid profiles, characterized by higher levels of protective HDL cholesterol and lower circulating triglycerides [2]. Research also indicates higher levels of adiponectin, an anti-inflammatory hormone secreted by fat tissue that enhances insulin action [3]. These combined metabolic advantages contribute to a lower overall risk of metabolic syndrome and related cardiovascular complications [4]. Maintaining a balanced diet and regular physical activity further enhances these genetic benefits [5].

Lower risk of type 2 diabetes; Higher protective HDL cholesterol; Lower fasting insulin levels.

What CC Genotype Means

Sample genotype: CC (Homozygous)

Inheriting two copies of the risk-associated C allele is linked to a roughly 1.2-fold higher risk of developing type 2 diabetes [1]. This genotype is strongly associated with insulin resistance and hyperinsulinemia, where the body struggles to respond to insulin and produces excess amounts to compensate [1]. Blood lipid profiles in these individuals often show elevated triglycerides and lower levels of protective HDL cholesterol [2]. Research suggests that these metabolic changes are partly driven by lower circulating levels of adiponectin, a hormone that normally protects against insulin resistance [3]. Interestingly, clinical trials indicate that individuals with this genotype may experience greater improvements in insulin sensitivity and weight loss when following a high-carbohydrate, low-fat diet compared to other diets [4]. Regular exercise is also highly effective at improving insulin action and counteracting this genetic predisposition [5].

Elevated risk of type 2 diabetes; Higher circulating triglycerides; Reduced insulin sensitivity.

What TC Genotype Means

Sample genotype: TC (Heterozygous)

Carrying one copy of the risk-associated C allele is linked to a moderately increased susceptibility to type 2 diabetes [1]. This genetic setup is associated with a mild reduction in insulin sensitivity, meaning the body may need to produce more insulin to keep blood sugar levels stable [1]. Metabolic studies show that this genotype also correlates with slightly higher triglyceride levels and lower HDL cholesterol compared to the protective double-T genotype [2]. Additionally, levels of adiponectin, a hormone that supports metabolic health, tend to be slightly reduced [3]. While this represents an elevated risk, lifestyle factors play a major role in determining actual health outcomes [4]. Engaging in regular physical activity and adopting a diet low in refined carbohydrates can significantly mitigate these genetic risks [5].

Moderately increased risk of type 2 diabetes; Slightly elevated triglycerides; Slightly lower HDL cholesterol.

Related Variants

Variants with shared genetic architecture

rs2943645 · IRS1 Gene · Chr 2 · Insulin Resistance Risk

rs2176040 · IRS1 Gene · Chr 2 · Metabolic Health

rs2943640 · IRS1 Gene · Chr 2 · Metabolic Health and Diabetes

Sources

Genetic variant near IRS1 is associated with type 2 diabetes, insulin resistance and hyperinsulinemia.

Associations between two single-nucleotide polymorphisms (rs1801278 and rs2943641) of insulin receptor substrate 1 gene and type 2 diabetes susceptibility: a meta-analysis.

A large electronic-health-record-based genome-wide study of serum lipids.

Exome-Derived Adiponectin-Associated Variants Implicate Obesity and Lipid Biology.

Common variants in and near IRS1 and subclinical cardiovascular disease in the Framingham Heart Study.

IRS1 gene variants, dysglycaemic metabolic changes and type-2 diabetes risk.

Circulating 25-hydroxyvitamin D, IRS1 variant rs2943641, and insulin resistance: replication of a gene-nutrient interaction in 4 populations of different ancestries.

Back to Variant Explorer

Content updated August 2026.

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