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rs2820443 (LYPLAL1)

What you carry at this position in your DNA and what research says about it.

Abdominal Fat Storage: 10/10 evidence, 17 publications.

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Sample genotype (not yours): T/T

Higher Abdominal Fat and Metabolic Risk

A tendency to store fat around the abdomen rather than the hips is linked to higher blood sugar and triglyceride levels.

What this genotype means: Higher tendency to store visceral abdominal fat; Slightly elevated risk of type 2 diabetes; Slightly higher triglyceride levels.

Sample genotype (not yours): C/C

Lower Abdominal Fat and Favorable Metabolic Profile

A natural tendency to store fat away from the abdomen protects metabolic health and lowers diabetes risk.

What this genotype means: Lower waist-to-hip ratio and reduced abdominal fat; Decreased risk of type 2 diabetes; Favorable triglyceride and pulse pressure levels.

Sample genotype (not yours): T/C

Typical Fat Distribution and Metabolic Profile

An intermediate genetic profile leads to average abdominal fat storage and typical metabolic health markers.

What this genotype means: Average waist-to-hip ratio; Typical baseline risk for type 2 diabetes; Standard blood lipid and blood pressure levels.

About LYPLAL1

Gene function and biological role

Gene Function: The LYPLAL1 gene encodes lysophospholipase-like protein 1, an enzyme that is highly active in adipose tissue and the liver [1]. While its precise biochemical function remains under investigation, structural studies show it acts as an esterase that breaks down short-chain lipid molecules. It plays a crucial role in determining how the body stores fat, specifically influencing whether fat is deposited subcutaneously under the skin or viscerally around abdominal organs [2]. Altered expression of this gene is closely linked to changes in metabolic health and liver fat accumulation [2].

Variant Impact: The rs2820443 variant is an intergenic genetic marker located near the LYPLAL1 gene on chromosome 1. This DNA change acts as a regulatory switch that influences the expression of nearby genes involved in fat cell development and lipid metabolism [1]. Large-scale genetic analyses have repeatedly linked this specific variant to variations in waist-to-hip ratio and body shape [3]. The genetic signals at this locus show notable sexual dimorphism, often exerting a stronger influence on body fat distribution in women than in men [4].

Key Insight: This genetic variant influences where your body prefers to store fat, shifting the balance between abdominal fat and hip fat without necessarily changing your overall body weight.

Location: LYPLAL1. Chromosome 1 · 1q41 · 219.6 Mb

Genotype Frequencies

Estimated prevalence by population

Global 60.1%; European 51.7%; African 85.6%; East Asian 53.9%; South Asian 59.3%; Americas 36.2%; Ashkenazi 58.3%; Finnish 50.8%; Middle Eastern 56.0%; Amish 87.5%.

Estimated TT genotype frequency.

Global 33.4%; European 40.4%; African 13.8%; East Asian 39.0%; South Asian 35.4%; Americas 47.9%; Ashkenazi 36.1%; Finnish 40.9%; Middle Eastern 37.7%; Amish 12.1%.

Estimated TC genotype frequency.

Global 6.5%; European 7.9%; African 0.6%; East Asian 7.1%; South Asian 5.3%; Americas 15.9%; Ashkenazi 5.6%; Finnish 8.2%; Middle Eastern 6.3%; Amish 0.4%.

Estimated CC genotype frequency.

Associated Traits

Showing effects for T/T genotype

Cardiovascular & Metabolic

Obesity & Body Composition

Waist-to-Hip Ratio. Evidence: 10/10. Source: PMID 23754948. Increased Ratio.

Body Fat Percentage. Evidence: 6/10. Source: PMID 39789286. Lower Percentage.

Diabetes & Glycemic Traits

Type 2 Diabetes. Evidence: 6/10. Source: PMID 29358691. ~1.07x Risk.

Lipids & Cholesterol

Triglycerides. Evidence: 6/10. Source: PMID 39024449. Increased Levels.

Hypertension

Pulse Pressure. Evidence: 8/10. Source: PMID 30224653. Increased Pressure.

Organ Systems

Bone, Joint & Connective Tissue Health

Hip Osteoarthritis. Evidence: 8/10. Source: PMID 30664745. Lower Risk.

Showing effects for C/C genotype

Waist-to-Hip Ratio. Evidence: 10/10. Source: PMID 23754948. Decreased Ratio.

Body Fat Percentage. Evidence: 6/10. Source: PMID 39789286. Higher Percentage.

Type 2 Diabetes. Evidence: 6/10. Source: PMID 29358691. Lower Risk.

Triglycerides. Evidence: 6/10. Source: PMID 39024449. Decreased Levels.

Pulse Pressure. Evidence: 8/10. Source: PMID 30224653. Decreased Pressure.

Hip Osteoarthritis. Evidence: 8/10. Source: PMID 30664745. ~1.06x Risk.

Showing effects for T/C genotype

Waist-to-Hip Ratio. Evidence: 10/10. Source: PMID 23754948. Slightly Increased.

Body Fat Percentage. Evidence: 6/10. Source: PMID 39789286. Typical Percentage.

Type 2 Diabetes. Evidence: 6/10. Source: PMID 29358691. Typical Risk.

Triglycerides. Evidence: 6/10. Source: PMID 39024449. Typical Levels.

Pulse Pressure. Evidence: 8/10. Source: PMID 30224653. Typical Pressure.

Hip Osteoarthritis. Evidence: 8/10. Source: PMID 30664745. Typical Risk.

What TT Genotype Means

What this genotype means for the people who carry it

Sample genotype: TT (Homozygous)

Storing fat predominantly in the abdominal cavity as visceral fat is a well-known driver of metabolic strain. Genetic studies show a clear link between this specific DNA pattern and an elevated waist-to-hip ratio, reflecting central fat accumulation [1]. This pattern of fat distribution is associated with a modest increase in the risk of developing type 2 diabetes [2]. Blood lipid profiles also tend to show higher levels of triglycerides [3]. Additionally, cardiovascular measurements indicate a slight increase in pulse pressure [4]. On the positive side, this physical structure is associated with a slightly lower risk of developing hip osteoarthritis [5].

Higher tendency to store visceral abdominal fat; Slightly elevated risk of type 2 diabetes; Slightly higher triglyceride levels.

What CC Genotype Means

Sample genotype: CC (Homozygous)

Storing fat preferentially in subcutaneous areas like the hips rather than around the abdominal organs provides a protective metabolic buffer. Genetic data demonstrates that this DNA pattern is strongly associated with a lower waist-to-hip ratio [1]. This favorable fat distribution pattern translates directly to a reduced risk of developing type 2 diabetes [2]. Lipid panels are also more likely to show healthier, lower triglyceride levels [3]. Cardiovascular strain is reduced, as evidenced by lower average pulse pressure measurements [4]. However, carrying this genetic profile is associated with a slightly higher overall body fat percentage and a modest increase in the risk of hip osteoarthritis [5].

Lower waist-to-hip ratio and reduced abdominal fat; Decreased risk of type 2 diabetes; Favorable triglyceride and pulse pressure levels.

What TC Genotype Means

Sample genotype: TC (Heterozygous)

Balanced genetic influences from both the major and minor alleles result in a highly typical physical and metabolic profile. Abdominal fat storage and waist-to-hip measurements generally align with population averages [1]. Metabolic markers, including blood sugar regulation and type 2 diabetes risk, remain at baseline levels [2]. Triglyceride levels and cardiovascular pulse pressure show no significant genetic elevation or reduction from this locus [3] [4]. Joint health is also typical, with an average baseline risk for developing hip osteoarthritis [5]. Overall, lifestyle factors like diet and exercise will play a much larger role than genetics in shaping metabolic outcomes.

Average waist-to-hip ratio; Typical baseline risk for type 2 diabetes; Standard blood lipid and blood pressure levels.

Related Variants

Variants with shared genetic architecture

rs4846567 · LYPLAL1 Gene · Chr 1 · Abdominal Fat Distribution

rs7599312 · ERBB4 Gene · Chr 2 · Weight and Body Shape

rs979012 · BMP2 Gene · Chr 20 · Body Fat Distribution

Sources

New genetic loci link adipose and insulin biology to body fat distribution.

Genome-wide association study of body fat distribution identifies adiposity loci and sex-specific genetic effects.

GWAS of allometric body-shape indices in UK Biobank identifies loci suggesting associations with morphogenesis, organogenesis, adrenal cell renewal and cancer.

Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits.

Re-analysis of public genetic data reveals a rare X-chromosomal variant associated with type 2 diabetes.

Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program.

Genetic analysis of over 1 million people identifies 535 new loci associated with blood pressure traits.

Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.

Back to Variant Explorer

Content updated August 2026.

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