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rs2230199 (C3)

What you carry at this position in your DNA and what research says about it.

Macular Degeneration Risk: 10/10 evidence, 61 publications.

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Sample genotype (not yours): G/G

Typical Macular Degeneration Risk

Carrying two copies of the common G allele is associated with typical complement system activity and a standard baseline risk of developing age-related macular degeneration.

What this genotype means: Typical complement system regulation; Baseline risk for age-related macular degeneration.

Sample genotype (not yours): C/C

Significantly Higher Macular Degeneration Risk

Carrying two copies of the C allele is associated with a significantly elevated risk of developing advanced age-related macular degeneration.

What this genotype means: Increased complement system activation; Significantly elevated risk of advanced macular degeneration.

Sample genotype (not yours): G/C

Increased Macular Degeneration Risk

Carrying one copy of the C allele is linked to a moderately higher risk of developing age-related macular degeneration.

What this genotype means: Altered complement system activity; Moderately increased risk of macular degeneration.

About C3

Gene function and biological role

Gene Function: Complement C3 encodes the central protein of the complement system, a crucial part of the innate immune response [1]. This system helps clear pathogens and cellular debris, but its overactivation can lead to chronic inflammatory tissue damage [2]. The C3 protein is cleaved into active fragments that coordinate inflammatory cascades and cell lysis [3]. Genetic variations in this gene are heavily implicated in susceptibility to inflammatory and degenerative diseases, particularly in the eye [2].

Variant Impact: The rs2230199 variant is a missense mutation in the C3 gene that changes the amino acid at position 102 from arginine to glycine [1]. This change alters the electrophoretic mobility of the C3 protein, historically distinguishing the fast and slow allotypes [4]. The glycine-encoding C allele is associated with increased complement activation and inflammatory deposition [3]. This functional alteration directly influences susceptibility to age-related macular degeneration by promoting chronic inflammation in retinal tissues [5].

Key Insight: This variant historically defined the fast and slow allotypes of the complement C3 protein, which were discovered decades before their genetic link to macular degeneration was established.

Location: C3. Chromosome 19 · 19p13.3 · 6.7 Mb

Genotype Frequencies

Estimated prevalence by population

Global 74.2%; European 62.7%; African 90.8%; East Asian 99.8%; South Asian 76.5%; Americas 78.6%; Ashkenazi 62.8%; Finnish 67.0%; Middle Eastern 67.2%; Amish 87.5%.

Estimated GG genotype frequency.

Global 23.2%; European 33.0%; African 9.0%; East Asian 0.2%; South Asian 22.0%; Americas 20.2%; Ashkenazi 32.9%; Finnish 29.7%; Middle Eastern 29.6%; Amish 12.1%.

Estimated GC genotype frequency.

Global 2.6%; European 4.3%; African 0.2%; East Asian < 0.1%; South Asian 1.6%; Americas 1.3%; Ashkenazi 4.3%; Finnish 3.3%; Middle Eastern 3.3%; Amish 0.4%.

Estimated CC genotype frequency.

Associated Traits

Showing effects for G/G genotype

Organ Systems

Vision & Eye Health

Macular Degeneration. Evidence: 10/10. Source: PMID 25688879. Typical Risk.

Dry Macular Degeneration. Evidence: 10/10. Source: PMID 22705344. Typical Risk.

Wet Macular Degeneration. Evidence: 10/10. Source: PMID 22705344. Typical Risk.

Retinopathy. Evidence: 8/10. Source: PMID 39024449. Typical Risk.

Immunity & Inflammation

Inflammatory & Circulating Protein Markers

Complement C3d Levels. Evidence: 6/10. Source: PMID 34814699. Typical Levels.

Showing effects for C/C genotype

Macular Degeneration. Evidence: 10/10. Source: PMID 25688879. ~2.5x Increased Risk.

Dry Macular Degeneration. Evidence: 10/10. Source: PMID 22705344. ~1.8x Increased Risk.

Wet Macular Degeneration. Evidence: 10/10. Source: PMID 22705344. ~1.6x Increased Risk.

Retinopathy. Evidence: 8/10. Source: PMID 39024449. Increased Risk.

Complement C3d Levels. Evidence: 6/10. Source: PMID 34814699. Increased Levels.

Showing effects for G/C genotype

Macular Degeneration. Evidence: 10/10. Source: PMID 25688879. ~1.6x Increased Risk.

Dry Macular Degeneration. Evidence: 10/10. Source: PMID 22705344. Increased Risk.

Wet Macular Degeneration. Evidence: 10/10. Source: PMID 22705344. Increased Risk.

Complement C3d Levels. Evidence: 6/10. Source: PMID 34814699. Slightly Increased.

What GG Genotype Means

What this genotype means for the people who carry it

Sample genotype: GG (Homozygous)

Arginine at position 102 represents the ancestral form of the complement C3 protein, which plays a critical role in the body's innate immune response [1]. Having two copies of this G allele is associated with normal regulation of the complement cascade, preventing the overactivation that can damage retinal tissues over time [2]. Large-scale genetic studies consistently show that this genotype does not elevate the risk for either dry or wet forms of macular degeneration [3]. Consequently, individuals with this profile exhibit baseline susceptibility to age-related vision loss [4].

Typical complement system regulation; Baseline risk for age-related macular degeneration.

What CC Genotype Means

Sample genotype: CC (Homozygous)

Two copies of the C allele result in complement C3 proteins entirely consisting of the glycine-102 variant [1]. This complete substitution is strongly linked to hyperactivation of the complement system, which promotes inflammatory damage and deposit formation beneath the retina [2]. Research demonstrates that this genotype carries a 2.5-fold or greater risk of developing age-related macular degeneration compared to the common genotype [3]. The risk is pronounced for advanced stages of the disease, including geographic atrophy and choroidal neovascularization [4].

Increased complement system activation; Significantly elevated risk of advanced macular degeneration.

What GC Genotype Means

Sample genotype: GC (Heterozygous)

A single copy of the C allele alters the complement C3 protein by substituting glycine for arginine at position 102 [1]. This structural change is thought to increase the stability or activity of the complement system, leading to low-grade, chronic inflammation in the retina [2]. Clinical data indicates that heterozygotes face approximately a 1.6-fold increased risk of developing age-related macular degeneration [3]. This elevated risk applies to both dry geographic atrophy and wet neovascular subtypes of the disease [4].

Altered complement system activity; Moderately increased risk of macular degeneration.

Related Variants

Variants with shared genetic architecture

rs1047286 · C3 Gene · Chr 19 · Macular Degeneration Risk

rs10737680 · CFH Gene · Chr 1 · Macular Degeneration Risk

rs34882957 · C9 Gene · Chr 5 · Macular Degeneration Risk

Sources

Molecular basis of polymorphisms of human complement component C3.

Variation in complement factor 3 is associated with risk of age-related macular degeneration.

Impact of the common genetic associations of age-related macular degeneration upon systemic complement component C3d levels.

Complement C3 variant and the risk of age-related macular degeneration.

Nonsynonymous single nucleotide polymorphisms in the complement component 3 gene are associated with risk of age-related macular degeneration: a meta-analysis.

A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.

Heritability and genome-wide association study to assess genetic differences between advanced age-related macular degeneration subtypes.

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Content updated September 2026.

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