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rs1800693 (TNFRSF1A)

What you carry at this position in your DNA and what research says about it.

Multiple Sclerosis Risk: 8/10 evidence, 26 publications.

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Sample genotype (not yours): T/T

Typical Multiple Sclerosis Risk

This genotype is associated with baseline risk for multiple sclerosis and other autoimmune conditions. It is the most common genetic profile globally.

What this genotype means: Baseline risk for multiple sclerosis; Slightly higher baseline C-reactive protein levels.

Sample genotype (not yours): C/C

Increased Multiple Sclerosis Risk

Carrying two copies of the variant C allele is linked to an increased risk of developing multiple sclerosis and primary biliary cholangitis.

What this genotype means: Increased risk of multiple sclerosis; Increased risk of primary biliary cholangitis; Slightly lower baseline C-reactive protein levels.

Sample genotype (not yours): T/C

Slightly Increased Multiple Sclerosis Risk

Carrying one copy of the variant C allele is linked to a slightly higher risk of developing multiple sclerosis and primary biliary cholangitis.

What this genotype means: Slightly increased risk of multiple sclerosis; Slightly increased risk of primary biliary cholangitis.

About TNFRSF1A

Gene function and biological role

Gene Function: The TNFRSF1A gene encodes a key subunit of the tumor necrosis factor receptor 1, which plays a central role in regulating inflammation and cell survival [1]. This receptor binds to tumor necrosis factor alpha, a powerful signaling protein that coordinates the body's immune response [2]. When this pathway is altered, it can lead to chronic inflammatory states or autoimmune diseases where the immune system mistakenly attacks healthy tissues [1] [3]. Interestingly, while blocking this receptor is highly effective for treating some autoimmune conditions like rheumatoid arthritis, it can actually trigger or worsen multiple sclerosis [4].

Variant Impact: This variant is located within an intron of the TNFRSF1A gene and alters how the genetic code is spliced together [4]. Specifically, the variant allele promotes the skipping of exon 6, which leads to the production of a shortened, soluble form of the receptor [4] [5]. This soluble receptor acts as a natural decoy, binding to and neutralizing tumor necrosis factor alpha in the bloodstream [4]. While this natural blockade mimics the effects of anti-inflammatory medications, it paradoxically increases the risk of developing multiple sclerosis [4] [6].

Key Insight: The genetic variant mimics the biological effect of anti-TNF medications, which are highly effective for arthritis but can trigger multiple sclerosis relapses.

Location: TNFRSF1A. Chromosome 12 · 12p13.31 · 6.3 Mb

Genotype Frequencies

Estimated prevalence by population

Global 39.3%; European 34.5%; African 42.5%; East Asian 74.7%; South Asian 48.7%; Americas 41.8%; Ashkenazi 34.5%; Finnish 34.3%; Middle Eastern 36.2%; Amish 39.2%.

Estimated TT genotype frequency.

Global 46.3%; European 48.5%; African 45.4%; East Asian 23.5%; South Asian 42.2%; Americas 45.7%; Ashkenazi 48.5%; Finnish 48.5%; Middle Eastern 47.9%; Amish 46.8%.

Estimated TC genotype frequency.

Global 14.4%; European 17.0%; African 12.1%; East Asian 1.8%; South Asian 9.1%; Americas 12.5%; Ashkenazi 17.0%; Finnish 17.2%; Middle Eastern 15.8%; Amish 14.0%.

Estimated CC genotype frequency.

Associated Traits

Showing effects for T/T genotype

Immunity & Inflammation

Autoimmune Diseases

Multiple Sclerosis. Evidence: 8/10. Source: PMID 19525953. Typical Risk.

Inflammatory & Circulating Protein Markers

C-Reactive Protein. Evidence: 8/10. Source: PMID 35459240. Slightly Higher.

Infection Susceptibility & Resistance

Pneumonia. Evidence: 4/10. Source: PMID 28928442. Typical.

Organ Systems

Liver Function & Disease

Biliary Cholangitis. Evidence: 7/10. Source: PMID 22961000. Typical Risk.

Showing effects for C/C genotype

Multiple Sclerosis. Evidence: 8/10. Source: PMID 19525953. ~1.4x Increased Risk.

C-Reactive Protein. Evidence: 8/10. Source: PMID 35459240. Slightly Lower.

Pneumonia. Evidence: 4/10. Source: PMID 28928442. Altered Risk.

Biliary Cholangitis. Evidence: 7/10. Source: PMID 22961000. ~1.27x Increased Risk.

Showing effects for T/C genotype

Multiple Sclerosis. Evidence: 8/10. Source: PMID 19525953. ~1.2x Increased Risk.

C-Reactive Protein. Evidence: 8/10. Source: PMID 35459240. Typical.

Biliary Cholangitis. Evidence: 7/10. Source: PMID 22961000. ~1.2x Increased Risk.

What TT Genotype Means

What this genotype means for the people who carry it

Sample genotype: TT (Homozygous)

Having two copies of the major T allele means your body produces typical levels of the full-length tumor necrosis factor receptor [1]. This maintains standard immune signaling pathways and is not associated with an elevated risk of developing multiple sclerosis [2]. Large-scale genomic studies confirm that this profile represents the baseline risk for autoimmune conditions like primary biliary cholangitis [3]. However, this genotype is associated with slightly higher baseline levels of C-reactive protein, a common marker of systemic inflammation [4]. ClinVar database entries classify this common genetic profile as harmless and benign [1]. It is the most frequent genotype across almost all ancestral populations.

Baseline risk for multiple sclerosis; Slightly higher baseline C-reactive protein levels.

What CC Genotype Means

Sample genotype: CC (Homozygous)

Having two copies of the C allele significantly increases the production of a soluble, truncated form of the tumor necrosis factor receptor [1]. This soluble receptor acts as a natural inhibitor of tumor necrosis factor alpha, mimicking the biological effects of anti-TNF medications [1] [2]. While this can lower some markers of systemic inflammation like C-reactive protein, it increases susceptibility to autoimmune attacks on the central nervous system [3] [4]. Large-scale genetic studies show that this genotype is associated with a 1.3-fold to 1.4-fold increase in the risk of developing multiple sclerosis [5]. It is also linked to a higher risk of primary biliary cholangitis [6]. However, because this variant is very common and has a low overall impact on its own, clinical databases like ClinVar classify it as benign rather than a direct disease-causing mutation [1].

Increased risk of multiple sclerosis; Increased risk of primary biliary cholangitis; Slightly lower baseline C-reactive protein levels.

What TC Genotype Means

Sample genotype: TC (Heterozygous)

Carrying one copy of the C allele alters the splicing of the TNFRSF1A gene, leading to the production of a soluble receptor isoform [1]. This soluble receptor can neutralize tumor necrosis factor alpha, which paradoxically increases susceptibility to certain autoimmune diseases [1] [2]. Large genome-wide association studies have linked this single-copy profile to a roughly 1.15-fold to 1.2-fold increase in the risk of multiple sclerosis [3]. It is also associated with a slightly elevated risk of primary biliary cholangitis, a chronic autoimmune liver disease [4]. Despite these statistical associations, ClinVar classifies this variant as benign because it does not cause disease on its own and is highly common in the general population [1]. Most people with this genotype never develop any autoimmune conditions.

Slightly increased risk of multiple sclerosis; Slightly increased risk of primary biliary cholangitis.

Related Variants

Variants with shared genetic architecture

rs1800692 · TNFRSF1A Gene · Chr 12 · Blood Cell Levels

rs4149577 · TNFRSF1A Gene · Chr 12 · Ankylosing Spondylitis Risk

rs4149584 · TNFRSF1A Gene · Chr 12 · Multiple Sclerosis Risk

Sources

Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci.

Stimulated PBMC-produced IFN-γ and TNF-α are associated with altered relapse risk in multiple sclerosis: results from a prospective cohort study.

Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.

TNF receptor 1 genetic risk mirrors outcome of anti-TNF therapy in multiple sclerosis.

TNFRSF1A polymorphisms and their role in multiple sclerosis susceptibility and severity in the Slovak population.

Multiple sclerosis genomic map implicates peripheral immune cells and microglia in susceptibility.

An international genome-wide meta-analysis of primary biliary cholangitis: Novel risk loci and candidate drugs.

Genetic analysis of over half a million people characterises C-reactive protein loci.

Back to Variant Explorer

Content updated August 2026.

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