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rs1333049 (CDKN2B-AS1)

What you carry at this position in your DNA and what research says about it.

Heart Disease Risk: 10/10 evidence, 59 publications.

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Sample genotype (not yours): G/G

Typical Heart Disease Risk

The G/G profile represents the typical genetic baseline for cardiovascular health. There is no elevated genetic risk for coronary artery disease or arterial calcification from this marker.

What this genotype means: Typical baseline risk for coronary artery disease; Normal levels of coronary artery calcification.

Sample genotype (not yours): C/C

Significantly Increased Heart Disease Risk

The C/C profile is linked to a significantly higher risk of coronary artery disease and arterial calcification. This genotype is associated with accelerated plaque buildup in the blood vessels.

What this genotype means: ~1.9x higher risk of coronary artery disease; Elevated levels of coronary artery calcification; Increased risk of ischemic stroke.

Sample genotype (not yours): G/C

Moderately Increased Heart Disease Risk

One copy of the C allele is linked to a moderately higher risk of developing coronary artery disease. This genetic variant can influence arterial plaque buildup and blood vessel inflammation.

What this genotype means: ~1.5x higher risk of coronary artery disease; Slightly increased risk of arterial calcification; Slightly higher susceptibility to stroke.

About CDKN2B-AS1

Gene function and biological role

Gene Function: The CDKN2B-AS1 gene, also known as ANRIL, encodes a long non-coding RNA that plays a critical role in epigenetic regulation [1]. This gene is located in the 9p21.3 chromosomal region, which is widely recognized as a major genetic hotspot for cardiovascular diseases [1]. ANRIL regulates the expression of neighboring genes involved in cell proliferation, aging, and inflammation [2]. By modulating these pathways, it directly influences the development of arterial plaques and vascular remodeling [2]. Altered expression of this non-coding RNA is strongly linked to cellular senescence in the vessel walls [3].

Variant Impact: Vascular health is influenced by rs1333049, an intergenic single nucleotide polymorphism located within the 9p21.3 risk locus [1]. This genetic change alters the transcription levels of the ANRIL long non-coding RNA, which in turn affects the expression of nearby tumor suppressor genes [1]. The altered expression levels promote smooth muscle cell proliferation and inflammation within arterial walls [2]. These vascular changes accelerate the progression of atherosclerosis and increase the susceptibility to arterial blockages [2]. It is one of the most heavily replicated genetic markers for cardiovascular outcomes in diverse global populations [4].

Key Insight: This variant is located in a gene desert on chromosome 9, meaning it does not code for a protein but instead acts as a powerful genetic master switch regulating vascular inflammation.

Location: CDKN2B-AS1. Chromosome 9 · 9p21.3 · 22.1 Mb

Genotype Frequencies

Estimated prevalence by population

Global 35.2%; European 26.3%; African 57.9%; East Asian 24.4%; South Asian 23.5%; Americas 26.7%; Ashkenazi 17.9%; Finnish 34.1%; Middle Eastern 20.1%; Amish 21.7%.

Estimated GG genotype frequency.

Global 46.1%; European 50.0%; African 36.4%; East Asian 50.0%; South Asian 50.0%; Americas 49.9%; Ashkenazi 48.8%; Finnish 48.6%; Middle Eastern 49.5%; Amish 49.8%.

Estimated GC genotype frequency.

Global 18.7%; European 23.8%; African 5.7%; East Asian 25.6%; South Asian 26.6%; Americas 23.3%; Ashkenazi 33.3%; Finnish 17.3%; Middle Eastern 30.4%; Amish 28.5%.

Estimated CC genotype frequency.

Associated Traits

Showing effects for G/G genotype

Cardiovascular & Metabolic

Heart Disease

Coronary Artery Disease. Evidence: 10/10. Source: PMID 17634449. Typical Risk.

Stroke

Stroke. Evidence: 8/10. Source: PMID 24262325. Typical Risk.

Vascular Health & Aneurysm

Arterial Calcification. Evidence: 6/10. Source: PMID 22144573. Typical.

Atherosclerosis. Evidence: 8/10. Source: PMID 39024449. Typical.

Showing effects for C/C genotype

Coronary Artery Disease. Evidence: 10/10. Source: PMID 17634449. ~1.9x Increased Risk.

Stroke. Evidence: 8/10. Source: PMID 24262325. Increased Risk.

Arterial Calcification. Evidence: 6/10. Source: PMID 22144573. Elevated.

Atherosclerosis. Evidence: 8/10. Source: PMID 39024449. Increased Risk.

Showing effects for G/C genotype

Coronary Artery Disease. Evidence: 10/10. Source: PMID 17634449. ~1.5x Increased Risk.

Stroke. Evidence: 8/10. Source: PMID 24262325. Slightly Higher Risk.

Arterial Calcification. Evidence: 6/10. Source: PMID 22144573. Slightly Elevated.

Atherosclerosis. Evidence: 8/10. Source: PMID 39024449. Slightly Higher Risk.

What GG Genotype Means

What this genotype means for the people who carry it

Sample genotype: GG (Homozygous)

The G/G profile represents the baseline genetic sequence at this specific locus on chromosome 9 [1]. Large-scale genome-wide association studies show that this genotype is not associated with the elevated rates of arterial plaque buildup seen in carriers of the C allele [1]. Studies confirm that individuals with this baseline profile have typical levels of coronary artery calcification [2]. This genotype is considered the normal or protective baseline across various ancestral groups [3]. Maintaining standard heart-healthy habits remains the primary way to manage overall cardiovascular wellness.

Typical baseline risk for coronary artery disease; Normal levels of coronary artery calcification.

What CC Genotype Means

Sample genotype: CC (Homozygous)

The C/C genotype is associated with an approximately 1.9-fold increase in the risk of developing coronary artery disease [1]. This genotype represents the highest genetic risk category at the well-studied 9p21.3 locus [1]. The genetic change leads to altered expression of the ANRIL non-coding RNA, promoting inflammation and plaque formation in the arteries [2]. Clinical studies have linked this profile to higher levels of coronary artery calcification and a greater risk of multi-vessel disease [3]. It is also associated with an increased likelihood of ischemic stroke [4]. Proactive cardiovascular screening and a heart-healthy lifestyle are particularly important for individuals with this genetic profile.

~1.9x higher risk of coronary artery disease; Elevated levels of coronary artery calcification; Increased risk of ischemic stroke.

What GC Genotype Means

Sample genotype: GC (Heterozygous)

Inheriting one copy of the C allele is associated with a roughly 1.5-fold increase in the risk of coronary artery disease [1]. This variant is located within a critical regulatory region that influences vascular inflammation and smooth muscle cell behavior [2]. Research indicates that carriers of this genotype tend to show higher rates of arterial plaque progression over time [3]. The presence of this allele is also linked to a slightly elevated risk of ischemic stroke [4]. While genetics plays a role, lifestyle factors such as diet and exercise are highly effective at mitigating this inherited risk.

~1.5x higher risk of coronary artery disease; Slightly increased risk of arterial calcification; Slightly higher susceptibility to stroke.

Related Variants

Variants with shared genetic architecture

rs2891168 · CDKN2B-AS1 Gene · Chr 9 · Heart Disease Risk

rs4977574 · CDKN2B-AS1 Gene · Chr 9 · Heart Disease Risk

rs1011970 · CDKN2B-AS1 Gene · Chr 9 · Breast Cancer Risk

Sources

New findings in the roles of Cyclin-dependent Kinase inhibitors 2B Antisense RNA 1 (CDKN2B-AS1) rs1333049 G/C and rs4977574 A/G variants on the risk to coronary heart disease.

ANRIL rs1333049 C/G polymorphism and coronary artery disease in a North Indian population - Gender and age specific associations.

Genetic Variation in 9p21 and the Plasma Proteome.

Genomewide association analysis of coronary artery disease.

Genome-wide association study for coronary artery calcification with follow-up in myocardial infarction.

Shared genetic susceptibility to ischemic stroke and coronary artery disease: a genome-wide analysis of common variants.

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Content updated August 2026.

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