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rs11549407 (HBB)

What you carry at this position in your DNA and what research says about it.

Thalassemia and Anemia Risk: 10/10 evidence, 18 publications.

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Sample genotype (not yours): G/G

Typical Hemoglobin Production and Low Thalassemia Risk

Two standard copies of the gene ensure normal production of beta-globin proteins. This genotype protects against inherited beta thalassemia and related severe blood disorders.

What this genotype means: Normal hemoglobin levels; Typical red blood cell size; No risk of transmitting beta-zero thalassemia.

Sample genotype (not yours): A/A

High Risk of Severe Beta Thalassemia Major

A complete absence of functional beta-globin occurs when this mutation is inherited from both parents. This leads to severe, life-threatening anemia requiring lifelong medical management.

What this genotype means: Severe life-threatening anemia; Absence of functional beta-globin; Requirement for lifelong medical treatment.

Sample genotype (not yours): G/A

Beta Thalassemia Carrier with Mild Anemia Risk

One copy of the mutation reduces the production of functional beta-globin. This typically causes mild anemia but provides carrier status for beta thalassemia.

What this genotype means: Mild chronic anemia; Smaller red blood cells; Carrier status for beta thalassemia major.

About HBB

Gene function and biological role

Gene Function: The HBB gene provides instructions for making a protein called beta-globin [1]. Beta-globin is an essential component of hemoglobin, the protein in red blood cells that carries oxygen throughout the body [1]. Normal hemoglobin consists of four protein subunits, including two beta-globins and two alpha-globins [1]. Mutations in the HBB gene can disrupt the production or structure of beta-globin, leading to various blood disorders [2]. These disorders include beta thalassemia and sickle cell disease, which impair oxygen transport and cause anemia [2].

Variant Impact: A premature stop signal is introduced into the HBB gene by this specific genetic change, known as the codon 39 nonsense mutation [1]. The premature stop signal prevents the cell from producing full-length, functional beta-globin protein [1]. Instead, the abnormal genetic message is typically destroyed by the cell's quality control systems before it can be translated [2]. This complete lack of beta-globin production is classified as a beta-zero mutation [1]. It is one of the most common genetic causes of beta thalassemia in Mediterranean populations [1].

Key Insight: This variant is a major cause of beta thalassemia in Mediterranean regions, particularly Sardinia, where it has been studied extensively.

Location: HBB. Chromosome 11 · 11p15.4 · 5.2 Mb

Origin Story: Carrying a single copy of a beta thalassemia mutation provides partial protection against severe malaria infections, which historically kept this mutation in the gene pool in malaria-prone regions like the Mediterranean.

Genotype Frequencies

Estimated prevalence by population

Global 99.9%; European 99.9%; African 100.0%; East Asian 100.0%; South Asian 100.0%; Americas 99.9%; Ashkenazi 100.0%; Finnish 100.0%; Middle Eastern 100.0%; Amish 100.0%.

Estimated GG genotype frequency.

Global 0.1%; European 0.1%; African 0.0%; East Asian 0.0%; South Asian 0.0%; Americas 0.1%; Ashkenazi 0.0%; Finnish 0.0%; Middle Eastern 0.0%; Amish 0.0%.

Estimated GA genotype frequency.

Global < 0.1%; European < 0.1%; African 0.0%; East Asian 0.0%; South Asian 0.0%; Americas < 0.1%; Ashkenazi 0.0%; Finnish 0.0%; Middle Eastern 0.0%; Amish 0.0%.

Estimated AA genotype frequency.

Associated Traits

Showing effects for G/G genotype

Rare Genetic Disorders

Hemoglobinopathies

Thalassemia. Evidence: 7/10. Source: PMID 6457059. Typical Risk.

Cardiovascular & Metabolic

Blood Cell & Iron Traits

Anemia. Evidence: 10/10. Source: PMID 39024449. Typical Risk.

Hemoglobin Levels. Evidence: 10/10. Source: PMID 33887194. Typical Levels.

Lipids & Cholesterol

Cholesterol Levels. Evidence: 10/10. Source: PMID 33339817. Slightly Higher.

Showing effects for A/A genotype

Thalassemia. Evidence: 7/10. Source: PMID 6457059. High Risk.

Anemia. Evidence: 10/10. Source: PMID 39024449. High Risk.

Hemoglobin Levels. Evidence: 10/10. Source: PMID 33887194. Extremely Low.

Cholesterol Levels. Evidence: 10/10. Source: PMID 33339817. Lower.

Showing effects for G/A genotype

Thalassemia. Evidence: 7/10. Source: PMID 6457059. Elevated Carrier Risk.

Anemia. Evidence: 10/10. Source: PMID 39024449. Slightly Increased.

Hemoglobin Levels. Evidence: 10/10. Source: PMID 33887194. Lower Levels.

Cholesterol Levels. Evidence: 10/10. Source: PMID 33339817. Typical.

What GG Genotype Means

What this genotype means for the people who carry it

Sample genotype: GG (Homozygous)

Standard hemoglobin production relies on having two functional copies of the HBB gene to build beta-globin subunits [1]. Lacking the codon 39 mutation means the body successfully manufactures healthy red blood cells with optimal oxygen-carrying capacity [1]. Clinical studies show that this common genotype is associated with normal hemoglobin levels and typical red blood cell counts [2]. While cholesterol levels may be slightly higher compared to carriers of the mutation, overall cardiovascular and hematological health remains within the typical range [3]. There is no risk of passing on beta-zero thalassemia to offspring from this genetic locus [1].

Normal hemoglobin levels; Typical red blood cell size; No risk of transmitting beta-zero thalassemia.

What AA Genotype Means

Sample genotype: AA (Homozygous)

Inheriting two copies of this premature stop mutation results in a complete absence of functional beta-globin protein [1]. This severe condition is known as beta thalassemia major or Cooley's anemia [1]. Without functional beta-globin, the body cannot form normal hemoglobin, leading to the rapid destruction of red blood cells [2]. Symptoms of severe anemia, fatigue, and bone complications typically appear within the first two years of life [2]. Regular blood transfusions and iron chelation therapy are standard medical interventions required to manage this condition [1].

Severe life-threatening anemia; Absence of functional beta-globin; Requirement for lifelong medical treatment.

What GA Genotype Means

Sample genotype: GA (Heterozygous)

Having one mutated copy of the gene means the body produces less functional beta-globin than typical [1]. This condition is widely known as beta thalassemia minor or beta thalassemia trait [1]. While most carriers live normal, healthy lives, they often experience mild, lifelong anemia and smaller-than-average red blood cells [2]. Routine blood tests frequently show reduced hemoglobin levels and altered red cell distribution width [2]. If both parents carry this mutation, there is a twenty-five percent chance their child will inherit beta thalassemia major [1].

Mild chronic anemia; Smaller red blood cells; Carrier status for beta thalassemia major.

Related Variants

Variants with shared genetic architecture

rs33930165 · HBB Gene · Chr 11 · Hemoglobin C Status

rs33946267 · HBB Gene · Chr 11 · Hemoglobin D Disease Risk

rs334 · HBB Gene · Chr 11 · Sickle Cell Status

Sources

beta zero thalassemia in Sardinia is caused by a nonsense mutation.

Mechanism of escape from nonsense-mediated mRNA decay of human beta-globin transcripts with nonsense mutations in the first exon.

Whole-genome sequencing association analysis of quantitative red blood cell phenotypes: The NHLBI TOPMed program.

Diversity and scale: Genetic architecture of 2068 traits in the VA Million Veteran Program.

Mutational Profile of Homozygous β-Thalassemia in Rio de Janeiro, Brazil.

Whole-exome imputation within UK Biobank powers rare coding variant association and fine-mapping analyses.

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Content updated August 2026.

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