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rs1048661 (LOXL1)

What you carry at this position in your DNA and what research says about it.

Exfoliation Glaucoma Risk: 8/10 evidence, 56 publications.

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Sample genotype (not yours): G/G

Higher Glaucoma Risk, Typical Aortic Health

An increased risk of developing exfoliation glaucoma is associated with this profile, particularly in individuals of Caucasian descent.

What this genotype means: Increased risk of exfoliation glaucoma in Caucasians; Typical aortic diameter; Increased risk of carpal tunnel syndrome.

Sample genotype (not yours): G/T

Moderate Glaucoma Risk, Increased Grip Strength

One copy of the risk allele for exfoliation glaucoma in Caucasians is present here, alongside a link to slightly higher physical grip strength.

What this genotype means: Moderate risk of exfoliation glaucoma; Slightly higher grip strength; Slightly increased risk of carpal tunnel syndrome.

Sample genotype (not yours): T/T

Typical Glaucoma Risk in Caucasians, Larger Aorta

A lower risk of exfoliation glaucoma in Caucasians is characteristic of this profile, though it is linked to a larger aortic diameter.

What this genotype means: Lower risk of exfoliation glaucoma in Caucasians; Larger descending aorta diameter; Higher grip strength.

About LOXL1

Gene function and biological role

Gene Function: The LOXL1 gene encodes lysyl oxidase-like 1, an enzyme essential for the biogenesis and maintenance of elastic fibers in various tissues [1]. It plays a critical role in the extracellular matrix, particularly in the eye, blood vessels, and skin [1] [2]. Decreased expression or activity of this enzyme leads to the accumulation of abnormal protein aggregates [2]. This process is a hallmark of systemic conditions like exfoliation syndrome, which can progress to severe glaucoma [1] [2].

Variant Impact: The rs1048661 variant is a missense mutation in exon 1 of the LOXL1 gene, resulting in an amino acid substitution from arginine to leucine at position 141 (p.Arg141Leu) [1]. This structural change alters the stability of the lysyl oxidase-like 1 protein, affecting its ability to properly cross-link elastin fibers [1] [2]. The variant is highly prevalent globally, but its clinical impact varies significantly by ancestry [2] [3]. In Caucasian populations, the ancestral G allele is strongly associated with exfoliation syndrome, whereas in East Asian populations, the T allele acts as the risk-conferring variant [3] [4].

Key Insight: The risk allele for exfoliation glaucoma completely flips depending on ancestry: the G allele is the risk factor in Caucasians, while the T allele is the risk factor in East Asians.

Location: LOXL1. Chromosome 15 · 15q24.1 · 73.9 Mb

Genotype Frequencies

Estimated prevalence by population

Global 51.9%; European 45.8%; African 69.1%; East Asian 20.7%; South Asian 44.9%; Americas 45.8%; Ashkenazi 55.3%; Finnish 47.8%; Middle Eastern 65.9%; Amish 56.3%.

Estimated GG genotype frequency.

Global 39.3%; European 43.7%; African 28.0%; East Asian 49.6%; South Asian 44.2%; Americas 43.7%; Ashkenazi 38.1%; Finnish 42.7%; Middle Eastern 30.6%; Amish 37.4%.

Estimated GT genotype frequency.

Global 8.8%; European 10.4%; African 2.8%; East Asian 29.7%; South Asian 10.9%; Americas 10.4%; Ashkenazi 6.6%; Finnish 9.5%; Middle Eastern 3.5%; Amish 6.2%.

Estimated TT genotype frequency.

Associated Traits

Showing effects for G/G genotype

Organ Systems

Vision & Eye Health

Exfoliation Glaucoma. Evidence: 5/10. Source: PMID 17690259. Increased Risk.

Bone, Joint & Connective Tissue Health

Carpal Tunnel Syndrome. Evidence: 7/10. Source: PMID 35332129. Increased Risk.

Cardiovascular & Metabolic

Vascular Health & Aneurysm

Aortic Diameter. Evidence: 8/10. Source: PMID 34837083. Typical.

Lifestyle, Fitness & Aging

Muscle Strength & Power

Grip Strength. Evidence: 7/10. Source: PMID 40374629. Typical.

Showing effects for G/T genotype

Carpal Tunnel Syndrome. Evidence: 7/10. Source: PMID 35332129. Slightly Increased Risk.

Aortic Diameter. Evidence: 8/10. Source: PMID 34837083. Slightly Larger.

Grip Strength. Evidence: 7/10. Source: PMID 40374629. Higher Strength.

Showing effects for T/T genotype

Exfoliation Glaucoma. Evidence: 5/10. Source: PMID 17690259. Typical Risk.

Carpal Tunnel Syndrome. Evidence: 7/10. Source: PMID 35332129. Typical Risk.

Aortic Diameter. Evidence: 8/10. Source: PMID 34837083. Larger Diameter.

What GG Genotype Means

What this genotype means for the people who carry it

Sample genotype: GG (Homozygous)

The presence of two G alleles is a well-documented risk factor for exfoliation syndrome and exfoliation glaucoma in Caucasian populations [1] [2]. This genetic variant alters the lysyl oxidase-like 1 enzyme, leading to the accumulation of abnormal fibrillar deposits in the eye [2] [3]. Over time, these deposits can block fluid drainage, increasing intraocular pressure and potentially leading to vision loss [1] [3]. Interestingly, this risk profile is reversed in East Asian populations, where the G allele is actually protective [4]. On the positive side, this genotype is associated with a typical, smaller descending aorta diameter, which is favorable for cardiovascular health [5]. It is also the higher-risk genotype for carpal tunnel syndrome, where G rather than T is the risk allele [6].

Increased risk of exfoliation glaucoma in Caucasians; Typical aortic diameter; Increased risk of carpal tunnel syndrome.

What GT Genotype Means

Sample genotype: GT (Heterozygous)

A heterozygous profile containing one G allele and one T allele represents an intermediate genetic profile with diverse physical effects. In Caucasian populations, having at least one G allele is associated with an elevated risk of exfoliation glaucoma due to altered elastin fiber maintenance in the eye [1] [2]. Conversely, in East Asian populations, the T allele is the risk-conferring variant, meaning heterozygous individuals still face moderate risk regardless of ancestry [3] [4]. On a physical level, the T allele is associated with increased hand grip strength, which is a key marker of overall muscular health and healthy aging [5]. However, the T allele also slightly increases the diameter of the descending aorta [6]. Carpal tunnel syndrome runs the other way at this variant: G is the risk allele there, so one copy leaves a slightly increased risk [7].

Moderate risk of exfoliation glaucoma; Slightly higher grip strength; Slightly increased risk of carpal tunnel syndrome.

What TT Genotype Means

Sample genotype: TT (Homozygous)

Two copies of the T allele are protective against exfoliation glaucoma in individuals of Caucasian descent, as they lack the high-risk G allele [1] [2]. However, in East Asian populations, the T allele is the primary risk factor for this condition, meaning East Asians with this genotype have an increased risk [3] [4]. Beyond eye health, this genotype is associated with a larger descending aorta diameter, which is a key cardiovascular measurement [5]. It is also linked to significantly higher hand grip strength, suggesting a positive influence on muscle function and physical resilience [6]. Finally, this genotype carries the lowest carpal tunnel risk at this variant, because the risk allele for that condition is G rather than T [7].

Lower risk of exfoliation glaucoma in Caucasians; Larger descending aorta diameter; Higher grip strength; Lower risk of carpal tunnel syndrome.

Related Variants

Variants with shared genetic architecture

rs2165241 · LOXL1 Gene · Chr 15 · Exfoliation Glaucoma Risk

rs3825942 · LOXL1 Gene · Chr 15 · Exfoliation Glaucoma Risk

rs16958477 · LOXL1-AS1 Gene · Chr 15 · Exfoliation Glaucoma Risk

Sources

Common sequence variants in the LOXL1 gene confer susceptibility to exfoliation glaucoma.

Genotype-correlated expression of lysyl oxidase-like 1 in ocular tissues of patients with pseudoexfoliation syndrome/glaucoma and normal patients.

Ancestral LOXL1 variants are associated with pseudoexfoliation in Caucasian Australians but with markedly lower penetrance than in Nordic people.

LOXL1 variants in elderly Japanese patients with exfoliation syndrome/glaucoma, primary open-angle glaucoma, normal tension glaucoma, and cataract.

Deep learning enables genetic analysis of the human thoracic aorta.

A genome-wide meta-analysis identifies 50 genetic loci associated with carpal tunnel syndrome.

Evaluation of LOXL1 polymorphisms in exfoliation syndrome in a Chinese population.

Combining cross-sectional and longitudinal genomic approaches to identify determinants of cognitive and physical decline.

Back to Variant Explorer

Content updated August 2026.

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